Well I picked up my truck and they have no clue as to why it throws the "low boost pressure" code. One of the techs went home sick and didn't pass it on if he cleared the code or not, so the second guy was in the dark. He checked for leaks and checked the sensors. As for the increased frequency in regens, that's part of the new programming of the new pump. Personally, I think it's a glitch in Ram's programming. I tried to have them re-flash the program and they said the system won't let them. Maybe @RamCares has some insight. Even the second tech said he's heard of a few cases but didn't hear of a solution. Star was clueless. This reminds me of a Ford I owned!
An idea for you is to check your EGR valve. My truck was throwing the low boost code, and the factory air filter change didn't help, couple of hundred miles down the road, the EGR valve failed.